Responsabile dell'U.O.
Cognome e Nome
PESOLE GRAZIANO
Qualifica
PO
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Settore scientifico disciplinare
BIO/11
graziano.pesole@uniba.it
Telefono
Personale strutturato
Cognome e Nome
GISSI CARMELA
Qualifica
PA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
D’ERCHIA ANNA MARIA
Qualifica
PA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
PICARDI ERNESTO
Qualifica
PO
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
CHIMIENTI GUGLIELMINA
Qualifica
Ricercatore
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
DE VIRGILIO CATERINA
Qualifica
Ricercatore
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
VOLPICELLA MARIATERESA
Qualifica
PA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
FOSSO BRUNO
Qualifica
RTDB
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Personale non strutturato
Cognome e Nome
SHARON COX
Qualifica
RTDA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
LAVECCHIA ANNA
Qualifica
RTDA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
FONZINO ADRIANO
Qualifica
RTDA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
MANDRIANI BARBARA
Qualifica
RTDA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
SILVESTRIS ALESSANDRO
Qualifica
RTDA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
ORECCHINI ELENA
Qualifica
RTDA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
PIETRO D’ADDABBO
Qualifica
RTDA
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
NOTARIO ELISABETTA
Qualifica
Post-doc
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
BUONANNO SIMONA
Qualifica
Post-doc
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
PERRELLI SONIA
Qualifica
Post-doc
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
PATRICELLI ELIANA
Qualifica
Ph.D student
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
KUMAR BABLU
Qualifica
Ph.D student
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Cognome e Nome
FRUGIS PETRONLLA
Qualifica
Ph.D student
Dipartimento
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Ente di appartenenza
UNIVERSITY OF BARI “A. MORO”
Linee di ricerca
1) Development of experimental strategies, based on massive sequencing and other molecular biology approaches, for genomic sequencing, analysis of the transcriptional profile, alternative splicing pattern, RNA editing and other epigenetic features.
2) Development of bioinformatics methodologies and specialized databases for the analysis and functional characterization of "omics" data. In particular, bioinformatics methodologies include: i) assembly and annotation of viral, prokaryotic and eukaryotic genomes; ii) study of the transcriptome in prokaryotes and eukaryotes and of the alternative splicing pattern of eukaryotic genes; iii) identification and functional characterization of RNA editing events; iv) epigenetic analysis; v) evolution and functional characterization of the mitochondrial genome; vi) taxonomic and functional characterization of the microbiome.
3) Identification of biomarkers and characterization of specific molecular processes in aging, neurodegenerative diseases and tumors;
4) Study of the microbiome in clinical and environmental samples using metagenomic approaches.
Tecnologie in uso dall'UO
- Phylogenetics analysis
- Bioinformatics
- Phage display
- RNA editing and modification
- Comparative Genomics and Molecular Evolution
- Real time and Digital PCR
- Next Generation Sequencing
- Genome editing
- Molecular Databases
- Integrative Omics
Strumentazione
Denominazione
Illumina Next 500
Liquid Handling Hamilton for NGS
Droplet Real Time PCR
Agilent Tapestation
BD FACS Melody Cytofluorimeter – Cell sorter
MiniION and GridION Oxford Nanopore
Struttura ove la strumentazione è allocata
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
Responsabile
prof. G. Pesole
prof. G. Pesole
prof. G. Pesole
prof. G. Pesole
prof. G. Pesole
prof. G. Pesole
Pubblicazioni
- Martino NA, Picardi E, Ciani E, D'Erchia AM, Bogliolo L, Ariu F, Mastrorocco A, Temerario L, Mansi L, Palumbo V, Pesole G, Dell'Aquila ME. Cumulus Cell Transcriptome after Cumulus-Oocyte Complex Exposure to Nanomolar Cadmium in an In Vitro Animal Model of Prepubertal and Adult Age. Biology (Basel). 2023 Feb 4;12(2):249. doi: 10.3390/biology12020249. PMID: 36829526; PMCID: PMC9953098.
- Lo Giudice C, Zambelli F, Chiara M, Pavesi G, Tangaro MA, Picardi E, Pesole G. UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions. Nucleic Acids Res. 2023 Jan 6;51(D1):D337-D344. doi: 10.1093/nar/gkac1016. PMID: 36399486; PMCID: PMC9825521.
- Piancone E, Fosso B, Marzano M, De Robertis M, Notario E, Oranger A, Manzari C, Bruno S, Visci G, Defazio G, D'Erchia AM, Filomena E, Maio D, Minelli M, Vergallo I, Minelli M, Pesole G. Natural and after colon washing fecal samples: the two sides of the coin for investigating the human gut microbiome. Sci Rep. 2022 Oct 25;12(1):17909. doi: 10.1038/s41598-022-20888-z. PMID: 36284112; PMCID: PMC9596478.
- Oranger A, Manzari C, Chiara M, Notario E, Fosso B, Parisi A, Bianco A, Iacobellis M, d'Avenia M, D'Erchia AM, Pesole G. Accurate detection and quantification of SARS-CoV-2 genomic and subgenomic mRNAs by ddPCR and meta- transcriptomics analysis. Commun Biol. 2021 Oct 22;4(1):1215. doi: 10.1038/s42003-021-02748-0. PMID: 34686777; PMCID: PMC8536764.
- Chiara M, Horner DS, Gissi C, Pesole G. Comparative Genomics Reveals Early Emergence and Biased Spatiotemporal Distribution of SARS-CoV-2. Mol Biol Evol. 2021 May 19;38(6):2547-2565. doi: 10.1093/molbev/msab049. PMID: 33605421; PMCID: PMC7928790.
- Chiara M, D'Erchia AM, Gissi C, Manzari C, Parisi A, Resta N, Zambelli F, Picardi E, Pavesi G, Horner DS, Pesole G. Next generation sequencing of SARS- CoV-2 genomes: challenges, applications and opportunities. Brief Bioinform. 2021 Mar 22;22(2):616-630. doi: 10.1093/bib/bbaa297. PMID: 33279989; PMCID: PMC7799330.
- Mansi L, Tangaro MA, Lo Giudice C, Flati T, Kopel E, Schaffer AA, Castrignanò T, Chillemi G, Pesole G, Picardi E. REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments. Nucleic Acids Res. 2021 Jan 8;49(D1):D1012-D1019. doi: 10.1093/nar/gkaa916. PMID: 33104797; PMCID: PMC7778987.
- Lavecchia A, Chiara M, De Virgilio C, Manzari C, Pazzani C, Horner D, Pesole G, Placido A. Comparative Genomics Suggests a Taxonomic Revision of the Staphylococcus cohnii Species Complex. Genome Biol Evol. 2021 Apr 5;13(4):evab020. doi: 10.1093/gbe/evab020. PMID: 33576800; PMCID: PMC8086632.
- Chiara M, Mandreoli P, Tangaro MA, D'Erchia AM, Sorrentino S, Forleo C, Horner DS, Zambelli F, Pesole G. VINYL: Variant prIoritizatioN by survival analysis. Bioinformatics. 2020 Dec 26:btaa1067. doi: 10.1093/bioinformatics/btaa1067. Epub ahead of print. PMID: 33367501.
- Chimienti G, Piredda R, Pepe G, van der Werf ID, Sabbatini L, Crecchio C, Ricciuti P, D'Erchia AM, Manzari C, Pesole G. Profile of microbial communities on carbonate stones of the medieval church of San Leonardo di Siponto (Italy) by Illumina-based deep sequencing. Appl Microbiol Biotechnol. 2016 Oct;100(19):8537-48. doi: 10.1007/s00253-016-7656-8. Epub 2016 Jun 9. PMID: 27283019.
Dottorati di ricerca
Componente UO
PESOLE GRAZIANO
PESOLE GRAZIANO
GISSI CARMELA
D’ERCHIA ANNA MARIA
PICARDI ERNESTO
PICARDI ERNESTO
Fosso Bruno
Dottorato di ricerca
BIOSCIENZE E BIOTECNOLOGIE
SYSTEMS MEDICINE (SEMM)
BIOSCIENZE E BIOTECNOLOGIE
BIOSCIENZE E BIOTECNOLOGIE
BIOSCIENZE E BIOTECNOLOGIE
ARTIFICIAL INTELLIGENCE, HEALTH & LIFE SCIENCES
BIOSCIENZE E BIOTECNOLOGIE
Coordinatore
VALENTI IVANA
MINUCCI SAVERIO
VALENTI IVANA
VALENTI IVANA
VALENTI IVANA
GUGLIELMELLI EUGENIO
VALENTI IVANA
Sede
Bari
MILANO
Bari
Bari
Bari
Roma
Bari