PESOLE GRAZIANO


Responsabile dell'U.O.

Cognome e Nome

PESOLE GRAZIANO

Qualifica

PO

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Settore scientifico disciplinare

BIO/11

E-mail

graziano.pesole@uniba.it

Telefono

Personale strutturato

Cognome e Nome

GISSI CARMELA

Qualifica

PA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

D’ERCHIA ANNA MARIA

Qualifica

PA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

PICARDI ERNESTO

Qualifica

PO

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

CHIMIENTI GUGLIELMINA

Qualifica

Ricercatore

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

DE VIRGILIO CATERINA

Qualifica

Ricercatore

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

VOLPICELLA MARIATERESA

Qualifica

PA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

FOSSO BRUNO

Qualifica

RTDB

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Personale non strutturato

Cognome e Nome

SHARON COX

Qualifica

RTDA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

LAVECCHIA ANNA

Qualifica

RTDA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

FONZINO ADRIANO

Qualifica

RTDA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

MANDRIANI BARBARA

Qualifica

RTDA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

SILVESTRIS ALESSANDRO

Qualifica

RTDA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

ORECCHINI ELENA

Qualifica

RTDA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

PIETRO D’ADDABBO

Qualifica

RTDA

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

NOTARIO ELISABETTA

Qualifica

Post-doc

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

BUONANNO SIMONA

Qualifica

Post-doc

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

PERRELLI SONIA

Qualifica

Post-doc

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

PATRICELLI ELIANA

Qualifica

Ph.D student

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

KUMAR BABLU

Qualifica

Ph.D student

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Cognome e Nome

FRUGIS PETRONLLA

Qualifica

Ph.D student

Dipartimento

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Ente di appartenenza

UNIVERSITY OF BARI “A. MORO”

Linee di ricerca

1) Development of experimental strategies, based on massive sequencing and other molecular biology approaches, for genomic sequencing, analysis of the transcriptional profile, alternative splicing pattern, RNA editing and other epigenetic features. 2) Development of bioinformatics methodologies and specialized databases for the analysis and functional characterization of "omics" data. In particular, bioinformatics methodologies include: i) assembly and annotation of viral, prokaryotic and eukaryotic genomes; ii) study of the transcriptome in prokaryotes and eukaryotes and of the alternative splicing pattern of eukaryotic genes; iii) identification and functional characterization of RNA editing events; iv) epigenetic analysis; v) evolution and functional characterization of the mitochondrial genome; vi) taxonomic and functional characterization of the microbiome. 3) Identification of biomarkers and characterization of specific molecular processes in aging, neurodegenerative diseases and tumors; 4) Study of the microbiome in clinical and environmental samples using metagenomic approaches.

Tecnologie in uso dall'UO

  1. 1.
    Phylogenetics analysis
  2. 2.
    Bioinformatics
  3. 3.
    Phage display
  4. 4.
    RNA editing and modification
  5. 5.
    Comparative Genomics and Molecular Evolution
  6. 6.
    Real time and Digital PCR
  7. 7.
    Next Generation Sequencing
  8. 8.
    Genome editing
  9. 9.
    Molecular Databases
  10. 10.
    Integrative Omics

Strumentazione

Denominazione

Illumina Next 500
Liquid Handling Hamilton for NGS
Droplet Real Time PCR
Agilent Tapestation
BD FACS Melody Cytofluorimeter – Cell sorter
MiniION and GridION Oxford Nanopore

Struttura ove la strumentazione è allocata

BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT
BIOSCIENCES, BIOTECHNOLOGY AND ENVIRONMENT

Responsabile

prof. G. Pesole
prof. G. Pesole
prof. G. Pesole
prof. G. Pesole
prof. G. Pesole
prof. G. Pesole

Pubblicazioni

  1. 1.
    Martino NA, Picardi E, Ciani E, D'Erchia AM, Bogliolo L, Ariu F, Mastrorocco A, Temerario L, Mansi L, Palumbo V, Pesole G, Dell'Aquila ME. Cumulus Cell Transcriptome after Cumulus-Oocyte Complex Exposure to Nanomolar Cadmium in an In Vitro Animal Model of Prepubertal and Adult Age. Biology (Basel). 2023 Feb 4;12(2):249. doi: 10.3390/biology12020249. PMID: 36829526; PMCID: PMC9953098.
  2. 2.
    Lo Giudice C, Zambelli F, Chiara M, Pavesi G, Tangaro MA, Picardi E, Pesole G. UTRdb 2.0: a comprehensive, expert curated catalog of eukaryotic mRNAs untranslated regions. Nucleic Acids Res. 2023 Jan 6;51(D1):D337-D344. doi: 10.1093/nar/gkac1016. PMID: 36399486; PMCID: PMC9825521.
  3. 3.
    Piancone E, Fosso B, Marzano M, De Robertis M, Notario E, Oranger A, Manzari C, Bruno S, Visci G, Defazio G, D'Erchia AM, Filomena E, Maio D, Minelli M, Vergallo I, Minelli M, Pesole G. Natural and after colon washing fecal samples: the two sides of the coin for investigating the human gut microbiome. Sci Rep. 2022 Oct 25;12(1):17909. doi: 10.1038/s41598-022-20888-z. PMID: 36284112; PMCID: PMC9596478.
  4. 4.
    Oranger A, Manzari C, Chiara M, Notario E, Fosso B, Parisi A, Bianco A, Iacobellis M, d'Avenia M, D'Erchia AM, Pesole G. Accurate detection and quantification of SARS-CoV-2 genomic and subgenomic mRNAs by ddPCR and meta- transcriptomics analysis. Commun Biol. 2021 Oct 22;4(1):1215. doi: 10.1038/s42003-021-02748-0. PMID: 34686777; PMCID: PMC8536764.
  5. 5.
    Chiara M, Horner DS, Gissi C, Pesole G. Comparative Genomics Reveals Early Emergence and Biased Spatiotemporal Distribution of SARS-CoV-2. Mol Biol Evol. 2021 May 19;38(6):2547-2565. doi: 10.1093/molbev/msab049. PMID: 33605421; PMCID: PMC7928790.
  6. 6.
    Chiara M, D'Erchia AM, Gissi C, Manzari C, Parisi A, Resta N, Zambelli F, Picardi E, Pavesi G, Horner DS, Pesole G. Next generation sequencing of SARS- CoV-2 genomes: challenges, applications and opportunities. Brief Bioinform. 2021 Mar 22;22(2):616-630. doi: 10.1093/bib/bbaa297. PMID: 33279989; PMCID: PMC7799330.
  7. 7.
    Mansi L, Tangaro MA, Lo Giudice C, Flati T, Kopel E, Schaffer AA, Castrignanò T, Chillemi G, Pesole G, Picardi E. REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments. Nucleic Acids Res. 2021 Jan 8;49(D1):D1012-D1019. doi: 10.1093/nar/gkaa916. PMID: 33104797; PMCID: PMC7778987.
  8. 8.
    Lavecchia A, Chiara M, De Virgilio C, Manzari C, Pazzani C, Horner D, Pesole G, Placido A. Comparative Genomics Suggests a Taxonomic Revision of the Staphylococcus cohnii Species Complex. Genome Biol Evol. 2021 Apr 5;13(4):evab020. doi: 10.1093/gbe/evab020. PMID: 33576800; PMCID: PMC8086632.
  9. 9.
    Chiara M, Mandreoli P, Tangaro MA, D'Erchia AM, Sorrentino S, Forleo C, Horner DS, Zambelli F, Pesole G. VINYL: Variant prIoritizatioN by survival analysis. Bioinformatics. 2020 Dec 26:btaa1067. doi: 10.1093/bioinformatics/btaa1067. Epub ahead of print. PMID: 33367501.
  10. 10.
    Chimienti G, Piredda R, Pepe G, van der Werf ID, Sabbatini L, Crecchio C, Ricciuti P, D'Erchia AM, Manzari C, Pesole G. Profile of microbial communities on carbonate stones of the medieval church of San Leonardo di Siponto (Italy) by Illumina-based deep sequencing. Appl Microbiol Biotechnol. 2016 Oct;100(19):8537-48. doi: 10.1007/s00253-016-7656-8. Epub 2016 Jun 9. PMID: 27283019.

Dottorati di ricerca

Componente UO

PESOLE GRAZIANO
PESOLE GRAZIANO
GISSI CARMELA
D’ERCHIA ANNA MARIA
PICARDI ERNESTO
PICARDI ERNESTO
Fosso Bruno

Dottorato di ricerca

BIOSCIENZE E BIOTECNOLOGIE
SYSTEMS MEDICINE (SEMM)
BIOSCIENZE E BIOTECNOLOGIE
BIOSCIENZE E BIOTECNOLOGIE
BIOSCIENZE E BIOTECNOLOGIE
ARTIFICIAL INTELLIGENCE, HEALTH & LIFE SCIENCES
BIOSCIENZE E BIOTECNOLOGIE

Coordinatore

VALENTI IVANA
MINUCCI SAVERIO
VALENTI IVANA
VALENTI IVANA
VALENTI IVANA
GUGLIELMELLI EUGENIO
VALENTI IVANA

Sede

Bari
MILANO
Bari
Bari
Bari
Roma
Bari